All modules for which code is available

• multiScaleAnalysis.SegmentationHighres.Cellpose_based_MacrophageSegmentation
• multiScaleAnalysis.SegmentationHighres.ConnectedComponent_MacrophageSegmentation
• multiScaleAnalysis.SegmentationHighres.Manual_curation
• multiScaleAnalysis.SegmentationHighres.Merge_ConnectedComponents_Cellpose
• multiScaleAnalysis.SegmentationHighres.gradient_watershed.filters
• multiScaleAnalysis.SegmentationHighres.gradient_watershed.flows
• multiScaleAnalysis.SegmentationHighres.gradient_watershed.flows_backup
• multiScaleAnalysis.SegmentationHighres.gradient_watershed.metrics
• multiScaleAnalysis.SegmentationHighres.gradient_watershed.plotting
• multiScaleAnalysis.SegmentationHighres.gradient_watershed.segmentation
• multiScaleAnalysis.SegmentationHighres.gradient_watershed.watershed
• multiScaleAnalysis.SegmentationHighres.gradient_watershed.watershed_backup
• multiScaleAnalysis.SegmentationHighres.preprocessing_class
• multiScaleAnalysis.SegmentationLowres.segment_lowres_3d_stitched
• multiScaleAnalysis.Stitching.multiScale_stitching
• multiScaleAnalysis.Tools.PSF_measurements
• multiScaleAnalysis.Tools.ShannonEntropyAnalysis
• multiScaleAnalysis.Visualization.visualize_stitched_lowres
• multiScaleAnalysis.Visualization.visualize_with_napariHighRes_A375
• multiScaleAnalysis.Visualization.visualize_with_napariHighRes_MDAMB231
• multiScaleAnalysis.Visualization.visualize_with_napariHighRes_MDAMB231_2
• multiScaleAnalysis.Visualization.visualize_with_napariHighRes_U2OS
• multiScaleAnalysis.Visualization.visualize_with_napariHighRes_U2OS_segmentation
• multiScaleAnalysis.Visualization.visualize_with_napariHighRes_nuclei_histones
• multiScaleAnalysis.Visualization.visualize_with_napariHighRes_spheroids
• multiScaleAnalysis.Visualization.visualize_with_napariLowRes_MDAMB231
• multiScaleAnalysis.Visualization.visualize_with_napariLowRes_nuclei
• multiScaleAnalysis.Visualization.visualize_with_napariLowRes_spheroids