Getting started and installation
Microscope characterization
Low-resolution analysis
High-resolution analysis
Data visualization
Python API references
multiScaleAnalysis
multiScaleAnalysis.SegmentationHighres
multiScaleAnalysis.SegmentationHighres.Cellpose_based_MacrophageSegmentation
multiScaleAnalysis.SegmentationHighres.ConnectedComponent_MacrophageSegmentation
multiScaleAnalysis.SegmentationHighres.gradient_watershed
multiScaleAnalysis.SegmentationHighres.gradient_watershed.filters
multiScaleAnalysis.SegmentationHighres.gradient_watershed.flows
multiScaleAnalysis.SegmentationHighres.gradient_watershed.flows_backup
multiScaleAnalysis.SegmentationHighres.gradient_watershed.metrics
multiScaleAnalysis.SegmentationHighres.gradient_watershed.plotting
multiScaleAnalysis.SegmentationHighres.gradient_watershed.segmentation
multiScaleAnalysis.SegmentationHighres.gradient_watershed.watershed
multiScaleAnalysis.SegmentationHighres.gradient_watershed.watershed_backup
multiScaleAnalysis.SegmentationHighres.Manual_curation
multiScaleAnalysis.SegmentationHighres.Merge_ConnectedComponents_Cellpose
multiScaleAnalysis.SegmentationHighres.postprocessing_removeCancersignal
multiScaleAnalysis.SegmentationHighres.preprocessing_class
multiScaleAnalysis.SegmentationLowres
multiScaleAnalysis.SegmentationLowres.segment_lowres_3d_stitched
multiScaleAnalysis.Stitching
multiScaleAnalysis.Stitching.multiScale_stitching
multiScaleAnalysis.Tools
multiScaleAnalysis.Tools.PSF_measurements
multiScaleAnalysis.Tools.ShannonEntropyAnalysis
multiScaleAnalysis.Visualization
multiScaleAnalysis.Visualization.visualize_stitched_lowres
multiScaleAnalysis.Visualization.visualize_with_napariHighRes_A375
multiScaleAnalysis.Visualization.visualize_with_napariHighRes_MDAMB231
multiScaleAnalysis.Visualization.visualize_with_napariHighRes_MDAMB231_2
multiScaleAnalysis.Visualization.visualize_with_napariHighRes_nuclei_histones
multiScaleAnalysis.Visualization.visualize_with_napariHighRes_spheroids
multiScaleAnalysis.Visualization.visualize_with_napariHighRes_U2OS
multiScaleAnalysis.Visualization.visualize_with_napariHighRes_U2OS_segmentation
multiScaleAnalysis.Visualization.visualize_with_napariLowRes_MDAMB231
multiScaleAnalysis.Visualization.visualize_with_napariLowRes_nuclei
multiScaleAnalysis.Visualization.visualize_with_napariLowRes_spheroids