multiScaleAnalysis.Visualization package

Submodules

multiScaleAnalysis.Visualization.visualize_stitched_lowres module

class multiScaleAnalysis.Visualization.visualize_stitched_lowres.image_visualizer_stitched

Bases: object

This class generates visualizations of low-resolution segmentation results.

__init__()

Initialize data folders and start Napari

load_visualize_images(vis_param)

Load images from folder and render them according Visualization parameters specified.

Parameters:

vis_param – Python dictionary of visulization paramters, e.g. vis_param[‘camera_angle1’]

multiScaleAnalysis.Visualization.visualize_with_napariHighRes_A375 module

class multiScaleAnalysis.Visualization.visualize_with_napariHighRes_A375.image_visualizer

Bases: object

This class generates visualizations of highres segmentation results.

__init__()

Initialize data folders and start Napari

load_images(vis_param)

Load images from folder and render them according Visualization parameters specified.

Parameters:

vis_param – Python dictionary of visulization paramters, e.g. vis_param[‘camera_angle1’]

multiScaleAnalysis.Visualization.visualize_with_napariHighRes_MDAMB231 module

class multiScaleAnalysis.Visualization.visualize_with_napariHighRes_MDAMB231.image_visualizer

Bases: object

This class generates visualizations of highres segmentation results.

__init__()

Initialize data folders and start Napari

load_images(vis_param)

” Load images from folder and render them according Visualization parameters specified.

Parameters:

vis_param – Python dictionary of visulization paramters, e.g. vis_param[‘camera_angle1’]

multiScaleAnalysis.Visualization.visualize_with_napariHighRes_MDAMB231_2 module

class multiScaleAnalysis.Visualization.visualize_with_napariHighRes_MDAMB231_2.image_visualizer

Bases: object

This class generates visualizations of highres segmentation results.

__init__()

Initialize data folders and start Napari

load_images(vis_param)

” Load images from folder and render them according Visualization parameters specified.

Parameters:

vis_param – Python dictionary of visulization paramters, e.g. vis_param[‘camera_angle1’]

multiScaleAnalysis.Visualization.visualize_with_napariHighRes_U2OS module

class multiScaleAnalysis.Visualization.visualize_with_napariHighRes_U2OS.image_visualizer

Bases: object

This class generates visualizations of highres segmentation results.

__init__()

Initialize data folders and start Napari

load_images(vis_param)

” Load images from folder and render them according Visualization parameters specified.

Parameters:

vis_param – Python dictionary of visulization paramters, e.g. vis_param[‘camera_angle1’]

multiScaleAnalysis.Visualization.visualize_with_napariHighRes_U2OS_segmentation module

class multiScaleAnalysis.Visualization.visualize_with_napariHighRes_U2OS_segmentation.image_visualizer

Bases: object

This class generates visualizations of high-resolution segmentation results.

__init__()

Initialize data folders and start Napari

load_images(vis_param)

” Load images from folder and render them according Visualization parameters specified.

Parameters:

vis_param – Python dictionary of visulization paramters, e.g. vis_param[‘camera_angle1’]

multiScaleAnalysis.Visualization.visualize_with_napariHighRes_nuclei_histones module

class multiScaleAnalysis.Visualization.visualize_with_napariHighRes_nuclei_histones.image_visualizer2

Bases: object

This class generates visualizations of highres segmentation results.

__init__()

Initialize data folders and start Napari

load_images(vis_param)

” Load images from folder and render them according Visualization parameters specified.

Parameters:

vis_param – Python dictionary of visulization paramters, e.g. vis_param[‘camera_angle1’]

multiScaleAnalysis.Visualization.visualize_with_napariHighRes_spheroids module

class multiScaleAnalysis.Visualization.visualize_with_napariHighRes_spheroids.image_visualizer

Bases: object

This class generates visualizations of high-resolution 3D data.

__init__()

Initialize data folders and start Napari

load_images(vis_param)

” Load images from folder and render them according Visualization parameters specified.

Parameters:

vis_param – Python dictionary of visulization paramters, e.g. vis_param[‘camera_angle1’]

multiScaleAnalysis.Visualization.visualize_with_napariLowRes_MDAMB231 module

class multiScaleAnalysis.Visualization.visualize_with_napariLowRes_MDAMB231.image_visualizer

Bases: object

This class generates visualizations of low-resolution rawdata of zebrafish xenograft.

__init__()

Initialize data folders and start Napari

load_images(vis_param)

Load images from folder and render them according Visualization parameters specified.

Parameters:

vis_param – Python dictionary of visulization paramters, e.g. vis_param[‘camera_angle1’]

multiScaleAnalysis.Visualization.visualize_with_napariLowRes_nuclei module

class multiScaleAnalysis.Visualization.visualize_with_napariLowRes_nuclei.image_visualizer

Bases: object

This class generates visualizations of low-resolution rawdata of early zebrafish embryos.

__init__()

Initialize data folders and start Napari

load_images(vis_param)

Load images from folder and render them according Visualization parameters specified.

Parameters:

vis_param – Python dictionary of visulization paramters, e.g. vis_param[‘camera_angle1’]

multiScaleAnalysis.Visualization.visualize_with_napariLowRes_spheroids module

class multiScaleAnalysis.Visualization.visualize_with_napariLowRes_spheroids.image_visualizer

Bases: object

This class generates visualizations of low-resolution rawdata of spheroids.

__init__()

Initialize data folders and start Napari

load_images(vis_param)

Load images from folder and render them according Visualization parameters specified.

Parameters:

vis_param – Python dictionary of visulization paramters, e.g. vis_param[‘camera_angle1’]

Module contents