multiScaleAnalysis package

Subpackages

• multiScaleAnalysis.SegmentationLowres package
  • Submodules
  • multiScaleAnalysis.SegmentationLowres.segment_lowres_3d_stitched module
    • segment_macrophage_lowres_class
      • segment_macrophage_lowres_class.__init__()
      • segment_macrophage_lowres_class.iterate_throughfolder()
      • segment_macrophage_lowres_class.open_image()
      • segment_macrophage_lowres_class.segment_cancercells()
      • segment_macrophage_lowres_class.segment_macrophage()
  • Module contents
• multiScaleAnalysis.Tools package
  • Submodules
  • multiScaleAnalysis.Tools.PSF_measurements module
    • Gauss()
    • binarize_label_image()
    • determinePSFvalues()
    • filter_centroidpositions()
    • filter_psfvalues()
    • get_centroidpositions()
    • get_psfvalues()
    • load_image()
  • multiScaleAnalysis.Tools.ShannonEntropyAnalysis module
    • fast_normalized_dct_shannon_entropy()
    • load_image()
  • Module contents
• multiScaleAnalysis.Stitching package
  • Submodules
  • multiScaleAnalysis.Stitching.multiScale_stitching module
    • image_stitcher
      • image_stitcher.__init__()
      • image_stitcher.crop_images()
      • image_stitcher.iterate_overfolder()
      • image_stitcher.load_image()
      • image_stitcher.make_maxprojections()
      • image_stitcher.optimize_overlap()
      • image_stitcher.perform_2D_maximum_fusion()
      • image_stitcher.perform_2D_weighted_average_fusion()
      • image_stitcher.perform_3D_fusion()
      • image_stitcher.stitching_workflow()
  • Module contents
• multiScaleAnalysis.Visualization package
  • Submodules
  • multiScaleAnalysis.Visualization.visualize_stitched_lowres module
    • image_visualizer_stitched
      • image_visualizer_stitched.__init__()
      • image_visualizer_stitched.load_visualize_images()
  • multiScaleAnalysis.Visualization.visualize_with_napariHighRes_A375 module
    • image_visualizer
      • image_visualizer.__init__()
      • image_visualizer.load_images()
  • multiScaleAnalysis.Visualization.visualize_with_napariHighRes_MDAMB231 module
    • image_visualizer
      • image_visualizer.__init__()
      • image_visualizer.load_images()
  • multiScaleAnalysis.Visualization.visualize_with_napariHighRes_MDAMB231_2 module
    • image_visualizer
      • image_visualizer.__init__()
      • image_visualizer.load_images()
  • multiScaleAnalysis.Visualization.visualize_with_napariHighRes_U2OS module
    • image_visualizer
      • image_visualizer.__init__()
      • image_visualizer.load_images()
  • multiScaleAnalysis.Visualization.visualize_with_napariHighRes_U2OS_segmentation module
    • image_visualizer
      • image_visualizer.__init__()
      • image_visualizer.load_images()
  • multiScaleAnalysis.Visualization.visualize_with_napariHighRes_nuclei_histones module
    • image_visualizer2
      • image_visualizer2.__init__()
      • image_visualizer2.load_images()
  • multiScaleAnalysis.Visualization.visualize_with_napariHighRes_spheroids module
    • image_visualizer
      • image_visualizer.__init__()
      • image_visualizer.load_images()
  • multiScaleAnalysis.Visualization.visualize_with_napariLowRes_MDAMB231 module
    • image_visualizer
      • image_visualizer.__init__()
      • image_visualizer.load_images()
  • multiScaleAnalysis.Visualization.visualize_with_napariLowRes_nuclei module
    • image_visualizer
      • image_visualizer.__init__()
      • image_visualizer.load_images()
  • multiScaleAnalysis.Visualization.visualize_with_napariLowRes_spheroids module
    • image_visualizer
      • image_visualizer.__init__()
      • image_visualizer.load_images()
  • Module contents

Module contents